If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Adding GATK to maven project
So we have a GATK License and would like to add GATK to our java maven project to call various walkers directly. Is this possible? Currently we are using Intellij. If this is not possible is it possible to add the jar as a library file to call the walkers directly that way? Thanks!