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Adding GATK to maven project

afriedenafrieden Cambridge, MAMember

So we have a GATK License and would like to add GATK to our java maven project to call various walkers directly. Is this possible? Currently we are using Intellij. If this is not possible is it possible to add the jar as a library file to call the walkers directly that way? Thanks!

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by Geraldine_VdAuwera

Issue Number
1166
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open
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  • Geraldine_VdAuweraGeraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin

    At least one of these is possible; I'll have to hunt down an engineer to get exact instructions.

  • afriedenafrieden Cambridge, MAMember
  • Geraldine_VdAuweraGeraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin

    Might take a couple days, don't despair -- but ping me if you don't hear from me by Tuesday.

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