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VariantsToBeagleUnphased output seems misformatted?
I was wondering if there is a formatting bug in VariantsToBeagleUnphased. Here is a site record:
M scaffold_1:266 A C A CC CA CA C
I think it should look like this:
M scaffold_1:266 A C CC CA CA CA
the fourth sample genotype is CA, but it appears to get split into two columns of alleles, on right after the Alternative allele column and one at the end.
thanks for your help,