Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

How to run Best Practices on parts of bam files

astrandastrand New YorkMember

Hi,

So far, I have only tried running Best Practices on bam files where each bam file corresponds to a certain chromosome. How do I go about partitioning the bam files further and running Best Practices on parts of bam files? I want to make my pipeline even more efficient.

Thanks for your help,
Alva

Sign In or Register to comment.