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HaplotypeCaller bugs

E.ScienceE.Science London, UKMember

Hi,

I have tried to solve several issues which came up while trying to run the HaplotypeCaller. For this one, I didn't find anything on google and to be honest when pasting the error, google doesn't even find something similar.

ERROR MESSAGE: Badly formed genome loc: Contig NC_007605 given as location, but this contig isn't present in the Fasta sequence dictionary

Can anyone please tell me what's the problem here? The fasta file I got was the one downloaded from the bundle: human_g1k_v37.fasta.gz

Any help would be really appreciated. Thank you!!

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