The frontline support team will be slow on the forum because we are occupied with the GATK Workshop on March 21st and 22nd 2019. We will be back and more available to answer questions on the forum on March 25th 2019.
Ordering samples with SelectVariants and VariantsToTable
Hello GATK team,
Given a sample.txt file to be used with -sf flag, and sample names given on each line, is there an option in SelectVariants and/or VariantsToTable that allows output to be ordered as specified?
desired sample fields in .vcf file:
Ind1 Ind4 Ind2 Ind3
This can be done with command line tools, but thought I would ask here first. Thanks!