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Ordering samples with SelectVariants and VariantsToTable
Hello GATK team,
Given a sample.txt file to be used with -sf flag, and sample names given on each line, is there an option in SelectVariants and/or VariantsToTable that allows output to be ordered as specified?
desired sample fields in .vcf file:
Ind1 Ind4 Ind2 Ind3
This can be done with command line tools, but thought I would ask here first. Thanks!