Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
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Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

how to get Homozygouys snps ... not able to use -G option

I have used GATK to call for the variants and have filtered based on the default parameters, however as I am working with a haploid organism can you please let me know how to use GT to filter only snps with 1/1. I am unable to use genotypeFilter or -G option

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