The frontline support team will be unavailable to answer questions until May27th 2019. We will be back soon after. Thank you for your patience and we apologize for any inconvenience!
Ordering samples with SelectVariants and VariantsToTable
Hello GATK team,
Given a sample.txt file to be used with -sf flag, and sample names given on each line, is there an option in SelectVariants and/or VariantsToTable that allows output to be ordered as specified?
desired sample fields in .vcf file:
Ind1 Ind4 Ind2 Ind3
This can be done with command line tools, but thought I would ask here first. Thanks!