Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Is it possible to improve compile time of GATK/Queue
I was wondering if it's possible to improve the compile time of GATK. I'm aware of
mvn verify -P\!queue
to avoid building Queue when compiling gatk-public. However, when developing Queue, the compile time for gatk-protected is huge, slowing down the development. Especially, the step
[INFO] Minimizing jar org.broadinstitute.gatk:gatk-queue-package-distribution:jar:3.3
takes a long time. Do you have any tricks up your sleeve to improve this during development? (I'm working on a custom JobRunner)