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Test-drive the GATK tools and Best Practices pipelines on Terra
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One plot error about CNVpipeline stage5
I met another error about GenomeStrip2.0 CNVdiscoveryPipeline, and it stopped at stage5. Some parts of the error log are as following,
ERROR 09:59:48,040 FunctionEdge - Contents of /faststorage/home/siyang/USER/yeweijian/Project/DanishPanGenome/2015January_Task/20150110_GenomeStrip/result/4_CNVpip/X/cnv_stage5/logs/CNVDiscoveryStage5-2.out: Error in xy.coords(x, y, xlabel, ylabel, log) : 'x' and 'y' lengths differ Calls: plotVariantsPerSamplePDF ... plotVariantsPerSample -> plot -> plot.default -> xy.coords In addition: Warning message: In max(vpsData, na.rm = T) : no non-missing arguments to max; returning -Inf Execution halted
It is a little weird that this error only occured in chrX and chrY, and I think it may caused by R settings. However, I am not able to fix it by myself, could you help?