Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Determining SNP inheritance
Thanks for all your help thus far! I'm not sure if I'd be able to figure out SNP calling without everyone here! I have one questions, however!
Does anyone know of a tool that will determine if a SNP/INDEL is inherited or de novo? Is there a GATK walker that will aid in this?