Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Bugfix: GCContent should be float instead of integer
Validating the vcf file which comes out of the VariantAnnotator is resulting in an error. The GC Content is a float and not an integer (which is stated in the INFO column).
At the moment we are do a search and replace ourselves, but it would be nice if it can be fixed in a next version of GATK.