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Queue and PBS scheduler

shaunaronshaunaron South AfricaMember

I would like to run HaplotypeCaller on some WGS samples from 24 individuals. I have attempted to use the multithreading option but would instead like to use the scatter-gather approach with Queue on our cluster as this will hopefully run much quicker. I see that there was a patch written for Queue to work with PBS scheduler some time back, however, I am struggling to find the associated documentation for it. Could you please point me in the right direction or provide some advice on how to do this.

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