If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Warning message from Mutect
I was running Mutect recently and I had this warning message at the end of the run.
WARN 23:35:58,735 RestStorageService - Error Response: PUT '/GATK_Run_Reports/nWCfXwuU0VtIYEk6rprnFDHtkJTGL7DV.report.xml.gz' -- ResponseCode: 403, ResponseStatus: Forbidden, Request Headers: [Content-Length: 401, Content-MD5: 83Z1d2So8+OPduJ7mIfn1Q==, Content-Type: application/octet-stream, x-amz-meta-md5-hash: f376757764a8f3e38f76e27b9887e7d5, Date: Fri, 20 Jun 2014 15:35:57 GMT, Authorization: AWS AKIAJXU7VIHBPDW4TDSQ:PhhcmE8R1qrQY1UKNvTSnLMeRIw=, User-Agent: JetS3t/0.8.1 (Linux/2.6.32-358.2.1.el6.x86_64; amd64; en; JVM 1.6.0_24), Host: s3.amazonaws.com, Expect: 100-continue], Response Headers: [x-amz-request-id: 534C83C0DB8C022A, x-amz-id-2: UclW27FDSEsRGmN0Qo0hKHgB2QJAHABCjj30jAzYhA7A9u4p0eKGas5sVntavYB1, Content-Type: application/xml, Transfer-Encoding: chunked, Date: Fri, 20 Jun 2014 15:35:58 GMT, Connection: close, Server: AmazonS3]
What does this warning means? And does this mean that I will have to re-run the job or will the job be completed successfully despite the warning message?
Thank you for you help.