Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
UnifiedGenotyper : -1 does not represent a valid base character
Hi, I suppose I had a problem with my bam file, but I don't know what I should look for.
Any help appreciated.
ERROR stack trace
java.lang.IllegalArgumentException: -1 does not represent a valid base character
cf attached file for complete stack.