If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Separating reads in AD into different strands
Is there any possibility that I can separate the reads in AD (Allele Depths by sample) into 5' and 3' strands?
e.g. the current expression of AD is REF:ALT1:ALT2 ...etc,
Can I get the expression of AD like REF_5':REF_3':ALT1_5':ALT1_3':ALT2_5':ALT2_3'