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Bayesian genotyper

meharmehar Member ✭✭
edited October 2012 in Ask the GATK team


Could anyone say how the GATK bayesian genotyper is different from samtools bayesian genotyper? Also, could some one provide a source for the mathematical notes of the GATK and samtools bayesian genotypers?

Best Answer


  • meharmehar Member ✭✭
    edited October 2012


    Hi there,

    Regarding the UnifiedGenotyper, the mathematical notes are available in the publication:

    Regarding the samtools genotyper, you'll need to contact the authors directly.


    Would you give some suggestions to fix the plots issue using baserecalibrator which i have posted earlier?

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