Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
Notice:
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Attention:
We will be out of the office for a Broad Institute event from Dec 10th to Dec 11th 2019. We will be back to monitor the GATK forum on Dec 12th 2019. In the meantime we encourage you to help out other community members with their queries.
Thank you for your patience!
We will be out of the office for a Broad Institute event from Dec 10th to Dec 11th 2019. We will be back to monitor the GATK forum on Dec 12th 2019. In the meantime we encourage you to help out other community members with their queries.
Thank you for your patience!
GATK Download Error

Hello Team GATK,
I am having some issues downloading the full version of the software. When I click on the download link it does one of two different things. 1) It continually asks me to log in and then prints all subsequent pages and banners within the original (for example the header (Home, About, etc) is printed twice. 2) It goes to a page which says "checking for login..." and never progresses. I am an academic user and am assuming that I should have rights to download the full version of GATK?
Thank you for the assistance in advance!
~Sean
Best Answer
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Geraldine_VdAuwera Cambridge, MA admin
Ah, that's my bad -- I seem to have broken the system with the forum update. I'll fix it asap and let you know when you can try again. Sorry for the inconvenience!
Answers
Ah, that's my bad -- I seem to have broken the system with the forum update. I'll fix it asap and let you know when you can try again. Sorry for the inconvenience!
Thank you for the help with a very quick response!
OK, should be fixed now. Let me know if you have any more issues.
Its working now. Thanks!