Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
i am confused about my results for realignment
i followed GATK steps for realignment and now when i am analysing result of realignment in IGV both bam and realigned bam shows same alignment on the intervals marked by realignedtargetcreator
please suggest what is the problem