Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
How is the HW proportion test calculated (chi-squared, exact, etc.)?
How is the HW-proportion goodness-of-fit test calculated? Is the GATK using a chi-square (corrected or not) or an exact method? Is the calculation correctly taking into account multiple alleles (where applicable)?
Post edited by Geraldine_VdAuwera on