Attention:
The frontline support team will be unavailable to answer questions until May27th 2019. We will be back soon after. Thank you for your patience and we apologize for any inconvenience!

How is the HW proportion test calculated (chi-squared, exact, etc.)?

bredesonbredeson Member ✭✭
edited October 2012 in Ask the GATK team

How is the HW-proportion goodness-of-fit test calculated? Is the GATK using a chi-square (corrected or not) or an exact method? Is the calculation correctly taking into account multiple alleles (where applicable)?

Post edited by Geraldine_VdAuwera on
Tagged:

Best Answers

Answers

Sign In or Register to comment.