If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Queue and JobRunner- how to pass the location of Drmaa
Hi (once more)
I am attempting to run Queue with a scala script and scheduling it with jobrunner. The script works nicely, but when I run it with jobRunner I get the error
"Exception in thread "main" java.lang.UnsatisfiedLinkError: Unable to load library 'drmaa':libdrmaa.so: cannot open shared object file: No such file or directory."
When I try to pass the location of the libdrmaa.so file (-Djava.library.path=/opt/sge625/sge/lib/lx24-amd64/) the result is the same.
How would I point jobRunner to the correct path for the Drmaa.so library?