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Test-drive the GATK tools and Best Practices pipelines on Terra
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Queue and JobReport.txt
I've been using Queue for pipelineing now for a little while, and have run in to an issue with the job report. The issue is that it's blank, after the pipeline has finished, the entire contents of the file is
I'm getting output from Queue saying that
INFO 21:37:35,646 QJobsReporter - Writing JobLogging GATKReport to file /home/daniel.klevebring/bin/autoseqer/AutoSeqPipeline.jobreport.txt
Any ideas why? The report would be a great tool, so I'm really interested in getting it to work properly.