The Frontline Support team will be offline February 18 for President's Day but will be back February 19th. Thank you for your patience as we get to all of your questions!
what interval files do you guys use for human exome variant calling?
I downloaded my intervals files from UCSC human exome captured file (hg19_exome_sorted.bed), but I keep getting lots of "./." in the final VCF files. I asked before in this forum, and I remember Geraldine said this may be because of sub-optimal interval files. This made me wonder what you guys use for human exome variant calling?