Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

# of lanes and BQSR

I have a study including 100 samples. While most samples were sequenced in one lane, a dozen were in two lanes. I wonder if the difference in # of lanes may lead to difference in overall base quality scores after BQSR?


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