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what's the difference between mutect and GATK-Mutect ?
I do not know the difference between the mutect from http://archive.broadinstitute.org/cancer/cga/mutect and from GATK ?
I find the latest version is 1.14 at the CGA (http://archive.broadinstitute.org/cancer/cga/mutect_download) ,however the version is 2 at GATK.
Is Same ?