This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!
Clean version of dbSNP in the GATK resource bundle
Hi I understand that version 129 of dbSNP is considered clean and does not share data from other databases such as 1000G projects.
What steps of the variant calling in WGS/WES analysis can be affected by using GATK resource bundle provided dnSNP138 after excluding the sites released after version 129 versus using all variants in the dbSNP version 138 ?
Are there any specific drawbacks of using latest dbSNP version 150 ?