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Problem with running Mutect2 and CosmicCodingMuts.vcf


I have project on tumor and normal samples I have trouble in running mutect2. I found I should do sorting step by Picard SortVcf but I got another error.

Please take a brief look at my pipeline and let me know what is the problem :

1- Downloading CosmicCoding and CosmicNonCoding

2- java -jar picard.jar SortVcf I= hg19/CosmicCodingMuts.vcf.gz O=hg19/CosmicCodingMuts_new.vcf.gz SEQUENCE_DICTIONARY=hg19/ucsc.hg19.dict

and I got these errors

Please let me know how can I fix it?

d position: 2:136,873,423
[Fri Jun 23 17:40:13 IRDT 2017] picard.vcf.SortVcf done. Elapsed time: 0.09 minutes.
To get help, see
Exception in thread "main" java.lang.NullPointerException
at java.util.TimSort.countRunAndMakeAscending(
at java.util.TimSort.sort(
at java.util.Arrays.sort(
at htsjdk.samtools.util.SortingCollection.spillToDisk(
at htsjdk.samtools.util.SortingCollection.add(
at picard.vcf.SortVcf.sortInputs(
at picard.vcf.SortVcf.doWork(
at picard.cmdline.CommandLineProgram.instanceMain(
at picard.cmdline.PicardCommandLine.instanceMain(
at picard.cmdline.PicardCommandLine.main(


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