Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
A USER ERROR has occurred: couldn't write file because writing failed with exception
The command I'm running:
spark-submit $JAR gatk-package-4.alpha.2-1147-g1477e1c-SNAPSHOT-local.jar PrintReadsSpark \
-I gs://mybucket/newbam.sort.bam \
A USER ERROR has occurred: Couldn't write file gs://mybucket/outputfinalspark.bam because writing failed with exception mybucket/outputfinalspark.bam.parts
This has been happening with every jar file