Holiday Notice:
The Frontline Support team will be slow to respond December 17-18 due to an institute-wide retreat and offline December 22- January 1, while the institute is closed. Thank you for your patience during these next few weeks. Happy Holidays!

Error running haplotypecaller (v3.3)

I am running the haplotypecaller on multiple samples all but one work correctly with the following commands, however one is resulting in a binary file instead of the gvcf. Any suggestions how to fix this?

HaplotypeCaller -i map/30.rmdup.bam -o gvcf/30.gvcf -r reference_F.fasta -p 10 -a gvcf/30.gvcf -g -e hc.log


Sign In or Register to comment.