Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Limit core usage with CombineGVCF
I'm trying to merge gvcf files created by the HaplotypeCaller, but I'm seeing some excessive core usage. The options for CombineGVCF do not include
--nt, so there's no way I'm seeing to limit core usage.
Is there a way to prevent CombineGVCF from using up all available cores?