If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
BCL to uBAM tutorial update
I'm very interested on try the BCL to uBAM protocol (Tutorial#6570 coming soon) you have mentioned on your article #6483 ((How to) Map and clean up short read sequence data efficiently). Do you have any ETA on when will it be available? Or do you have any link to an example or piece of code I could start trying?
I was looking to the various tools from Picard, but I wouldn't know what should be the proper way of using them if I will be replacing Illumina's Bcl2FastQ software.
Thank you very much in advance.