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Obtaining the data used in automated tests in a more automated manner

bbimberbbimber HomeMember

GATK has integration tests that depend on data, I presume all part of the GATK bundle. Is there anything in the build that downloads the expected data in a more automated manner than me manually downloading these to my computer? I assume something exists because you have automated testing, but I'm not seeing it. Thanks for any help.

Answers

  • Geraldine_VdAuweraGeraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin
    Actually the test data is separate from the bundle, and where the test data lives is very different for GATK 3 vs GATK4. For 3 unfortunately we can't share it, it's on a private system. I know that sucks, we don't like it either. For 4 it's all public though I personally don't know how you access it. I would recommend asking in the github repo to get an answer directly from the devs who manage it.
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