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CombineVariants 'set' value separator is dash but can it be changed
I have a request for CombineVariants: can the separator between values in the "set=" keyword that is added to the INFO column be settable to something other than "-" (which I use in my sample names)? Comma would be nice. In fact, I think the VCF spec suggests it should be comma:
"INFO fields are encoded as a semicolon-separated series of short keys with optional values in the format: =[,data]."
You have the ##INFO line with Number=1, but it could be Number=., then use commas to separate each value in the INFO field.