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HTSJDK SamLocusIterator / SamReader pass bamindex file

kerbskerbs MunichMember

Hello,
I don't know if it's the right place to ask this question but I'm developing some small stuff with the HTSJDK package and need to somehow tell SamLocusIterator/SamReaderFactory where it can find the BAM-index file. For now the file has to be in the same folder and the filetype needs to be ".bai".

Is there a possibility to pass an individual location of the index file which I maybe missed?
Thanks in advance.

Kind regards,
Paul

Issue · Github
by Sheila

Issue Number
2017
State
closed
Last Updated
Assignee
Array
Milestone
Array
Closed By
vdauwera

Answers

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