Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Is it necessary to cancel realignment for germline snp and indel calling in gVCF mode ?
I find that the realignment step of Best Practice has been canceled!
I do not know why ？
the following link is the Best Practice page I read.