Test-drive the GATK tools and Best Practices pipelines on Terra
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oncotator cmd vs website result difference
I just installed the oncotator v188.8.131.52 using the virtualenv option. With this I am using the oncotator_v1_ds_Jan262014 database.
When I run oncotator for about 20 mutations, I get different annotations for the command line oncotator version and the online website version. Specifically, a mutation is called a missense mutation on the website version, but the cmd version calls it an intronic version? We expect it to be a missense! Why these different results?
My mutations were initially alligned with b37.