If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
WGS HC call intervals for GRCh37.p13
I saw in post #9394 that you provide calling interval files for WGS. Great idea! I found one in the bundle but only for hg38. Did I miss something similar for GRCh37.p13, or is this planned?
If not, can you please confirm that the coordinates in the bundle file are for hg38 (first GRCh38 no patch).
Many thanks in advance!