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Picard 2.10.4 has MAJOR CHANGES that impact throughput of pipelines. Default compression is now 1 instead of 5, and Picard now handles compressed data with the Intel Deflator/Inflator instead of JDK.
GATK version 4.beta.2 (i.e. the second beta release) is out. See the GATK4 BETA page for download and details.

# WGS HC call intervals for GRCh37.p13

Member
edited April 21

Hi Team,
I saw in post #9394 that you provide calling interval files for WGS. Great idea! I found one in the bundle but only for hg38. Did I miss something similar for GRCh37.p13, or is this planned?
If not, can you please confirm that the coordinates in the bundle file are for hg38 (first GRCh38 no patch).

Post edited by KlausNZ on
Tagged:

• Member

Thanks Geraldine, that's just fantastic (and quicker than I could edit my post ;-)