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REGARDING COMBINING VARIANTS IN CLOUDMAP IN GALAXY

SUPISUPI USAMember

Hi
I am new to sequencing and i tried with galaxy i am done with vcf files of all mutants and now i have to combine variants but its showing error the tool is as follows
https://usegalaxy.org/root?tool_id=toolshed.g2.bx.psu.edu/repos/devteam/variant_combine/gatk_variant_combine/0.0.4
Please help what is wrong and how i can correct that

Comments

  • SheilaSheila Broad InstituteMember, Broadie ✭✭✭✭✭

    @SUPI
    Hi,

    I am not quite sure what you are asking? We cannot help with Galaxy issues. You will have to ask them for help. However, if you are running a GATK tool and get some error message not related to Galaxy, please post the full error message and log output from the run here and we can try to help.

    -Sheila

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