GATK 3.7 HaplotypeCaller

teodora_aleksicteodora_aleksic SerbiaMember
edited April 2017 in Ask the GATK team

Hi,

I've been looking at the release notes for GATK 3.7. I would like to know if turning on the -newQual setting for HaplotypeCaller would be considered Best Practice for WGS and WES pipelines.

Thanks,
Teodora

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Issue · Github
by Sheila

Issue Number
1962
State
closed
Last Updated
Assignee
Array
Milestone
Array
Closed By
vdauwera

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