Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Default value of HaplotypeCaller
I am working with gatk tool package "HaplotypeCaller" to find SNPs and Indels.
I want to know what are the initial default values of HaplotypeCaller, and can I change these values according to my need.