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GATK4 does not include DepthOfCoverage tool

AmandaChamberlainAmandaChamberlain Agriculture VictoriaMember

It appears that DepthOfCoverage is not listed as a tool for GATK4, I get the following error

A USER ERROR has occurred: 'DepthOfCoverage' is not a valid command.

I have searched through the list of available tools and cannot find anything with a similar function. Is there a new tool for calculating coverage?


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