The frontline support team will be unavailable to answer questions on April 15th and 17th 2019. We will be back soon after. Thank you for your patience and we apologize for any inconvenience!
GATK4 does not include DepthOfCoverage tool
It appears that DepthOfCoverage is not listed as a tool for GATK4, I get the following error
A USER ERROR has occurred: 'DepthOfCoverage' is not a valid command.
I have searched through the list of available tools and cannot find anything with a similar function. Is there a new tool for calculating coverage?