Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
GATK4 does not include DepthOfCoverage tool
It appears that DepthOfCoverage is not listed as a tool for GATK4, I get the following error
A USER ERROR has occurred: 'DepthOfCoverage' is not a valid command.
I have searched through the list of available tools and cannot find anything with a similar function. Is there a new tool for calculating coverage?