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OxoGmetrics task in GATK not found
I am trying run the OxoGMetrics task according to the following command (which I found in the Firehose task registry):
java -Xmx2g -jar /GenomeAnalysisTK.jar --analysis_type OxoGMetrics -R -I -L -o
and I'm realizing that this task doesn't exist in the current GATK framework (3.7). Supposedly this task was written / updated last in 2012 so I went back and compiled the version of GATK at the time (1.6). I checked the available tasks for this version of GATK and OxoGMetrics is still not included.
I've tried running the picard version of this task but the output headers are incompatible with the "append OxoG" step.
I'm clearly missing something here and could use some advice on how to run this part of the OxoG workflow. Thank you so much.