Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Ref Allele in MUTECT2 vcf
Dear all, happy and fruitful spring time ! this question may have been asked before, and just wanted to know please :
the REF allele that is reported by MUTECT2 is according to the reference sequence, or is it from the germline sample ? Thank you !