Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Mutect build Failure
Hi, I am currently trying to build MuTect on my Linux machine. I have followed the instructions as on the page https://github.com/broadinstitute/mutect/blob/master/README.md. However when I carry out the 'build MuTect' step, I run into the error as follows;
Failed to execute goal on project mutect: Could not resolve dependencies for project org.broadinstitute.cga:mutect:jar:1.1.7: The following artifacts could not be resolved: org.broadinstitute.sting:gatk-protected:jar:3.1, org.broadinstitute.sting:gatk-framework:jar:tests:3.1: Failure to find org.broadinstitute.sting:gatk-protected:jar:3.1 in file:../../gatk-protected/public/repo was cached in the local repository, resolution will not be reattempted until the update interval of sting.public.repo.local has elapsed or updates are forced -> [Help 1]