We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Mutect build Failure
Hi, I am currently trying to build MuTect on my Linux machine. I have followed the instructions as on the page https://github.com/broadinstitute/mutect/blob/master/README.md. However when I carry out the 'build MuTect' step, I run into the error as follows;
Failed to execute goal on project mutect: Could not resolve dependencies for project org.broadinstitute.cga:mutect:jar:1.1.7: The following artifacts could not be resolved: org.broadinstitute.sting:gatk-protected:jar:3.1, org.broadinstitute.sting:gatk-framework:jar:tests:3.1: Failure to find org.broadinstitute.sting:gatk-protected:jar:3.1 in file:../../gatk-protected/public/repo was cached in the local repository, resolution will not be reattempted until the update interval of sting.public.repo.local has elapsed or updates are forced -> [Help 1]