Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
exome best practice
I want to use MUTCET 1.1.7 to detect SNV for my exome sequence（The sequencing depth was greater than 200X）.Can I directly use the bam file from the picard's mark duplicates ? The BaseRecalibrator and indel realignment would take a lot of time .