The frontline support team will be slow on the forum because we are occupied with the GATK Workshop on March 21st and 22nd 2019. We will be back and more available to answer questions on the forum on March 25th 2019.
Input file for intervals argument
Hi All, I am currently running MuTect 2 on my files. However, this is taking quite a deal of time per tumour/ normal pair analysis. I have read that using the intervals argument would decrease runtime. However, I am unsure what such a file looks like or where to get one. My data is derived from exome sequencing with exome capture being performed using Sureselect Human All Exon V5. I have downloaded the files: S04380110_AllTracks.bed, S04380110_Covered.bed, S04380110_Padded.bed, S04380110_Regions.bed, S04380110_Targets.txt and S04380110_Regions.bed. Not sure if any of these are correct file to use. Thanks for any help.