"Flag" type in fields of GenomicsDB vid_mapping_file

scottwoodscottwood Brisbane, AustraliaMember

Hi folks,

We're having a preliminary investigation of GenomicsDB and hoping to try importing some VCFs. In the Fields Information section of the vid_mapping_file, we need to define some INFO fields which are of type "Flag". While looking at the docs (https://github.com/Intel-HLS/GenomicsDB/wiki/Importing-VCF-data-into-GenomicsDB) I only see "int", "float", and "char", however the VCF specifications (4.2 and 4.3) allow Flag.

Will the vcf2tiledb tool handle the field happily if I use one of the permitted types instead of flag?



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