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2017 Feb workshop presentation slides and tutorial materials

Geraldine_VdAuweraGeraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie
edited May 16 in Announcements

These are the materials that we are presenting at the February 2017 GATK workshop in Leuven, Belgium.

Materials Link
DAY 1: GATK Best Practices talks
Slide decks presented on Day 1 Google Drive Folder
DAY 2: Germline variant discovery
Variant Discovery Tutorial Worksheet (Day 2 AM) PDF on Google Drive
Variant Filtering Tutorial Worksheet (Day 2 PM) PDF on Google Drive
Germline Data Bundle (Day 2) ZIP on Google Drive
DAY 3 AM: Somatic mutation discovery
MuTect2 Tutorial Worksheet (Day 3 AM) PDF on Google Drive
MuTect2 Data Bundle (Day 2) TAR.GZ on Google Drive
CNV Tutorial Worksheet (Day 3 AM) PDF on Google Drive
CNV Data Bundle (Day 3 AM) ZIP on GATK website
DAY 3 PM: Pipelining with WDL
WDL Pipelining Tutorial Worksheet (Day 3 PM) PDF on Google Drive
WDL Pipelining Data Bundle (Day 2) ZIP on Google Drive
Post edited by Geraldine_VdAuwera on

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