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ASECounter

Hi,
do you have any tutorial or documentation about how to use ASECounter in combination with vcf2diploid tool and 2-way STAR alignment? You mention this in the paper "Tools and best practices" but not in details. What processing needs to be done after STAR alignment? If I align to two genomes, I will have two bam files as output. Do you have tool to merge them, filtering the counts? Thank you!

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