The Frontline Support team will be offline February 18 for President's Day but will be back February 19th. Thank you for your patience as we get to all of your questions!
do you have any tutorial or documentation about how to use ASECounter in combination with vcf2diploid tool and 2-way STAR alignment? You mention this in the paper "Tools and best practices" but not in details. What processing needs to be done after STAR alignment? If I align to two genomes, I will have two bam files as output. Do you have tool to merge them, filtering the counts? Thank you!